Frankly, I don't have a big problem with the way that seeding is conducted. My beef is with the number of classes and qualifiers. If we had fewer classes and fewer qualifiers, then the playoffs would really be determining the best of the best, as opposed to the best of them all.
My solution, short of cutting back on the number of classes and the size of the overall playoff field, is to stick with the seeding system as is, be consistent across the board, and let the better seed host no matter what. Within the construct of that system, they earned that right.
I may not agree with letting the higher seed host no matter what, but I definitely agree that there are too many classes and qualifiers.